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Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape

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Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape

Novozhilov, Koonin, Wolf

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Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape

Novozhilov, Koonin, Wolf

24 pages

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Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

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Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Makarova, Yutin Natalya, Koonin, Wolf

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Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Makarova, Yutin Natalya, Koonin, Wolf

15 pages

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Anti-malarial activity of geldanamycin derivatives in mice infected with Plasmodium yoelii

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Anti-malarial activity of geldanamycin derivatives in mice infected with Plasmodium yoelii

Mout Rubul, Xu Zhi-Dong, Jarori, Wolf, Jo

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Anti-malarial activity of geldanamycin derivatives in mice infected with Plasmodium yoelii

Mout Rubul, Xu Zhi-Dong, Jarori, Wolf, Jo

10 pages

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Proteome analysis of human substantia nigra in Parkinson s disease

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Proteome analysis of human substantia nigra in Parkinson's disease

Heyny-Von, Mall Gerhard, Wolf Sabine, Wolf, Werner

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Proteome analysis of human substantia nigra in Parkinson's disease

Heyny-Von, Mall Gerhard, Wolf Sabine, Wolf, Werner

14 pages

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Koonin, Wolf, Makarova, Grishin, Shabalina

Documents

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Koonin, Wolf, Makarova, Grishin, Shabalina

26 pages

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Finger extensor variability in TMS parameters among chronic stroke patients

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Finger extensor variability in TMS parameters among chronic stroke patients

Kahn Shannon, Weiss, Weiss Paul, Wolf, Butler

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Finger extensor variability in TMS parameters among chronic stroke patients

Kahn Shannon, Weiss, Weiss Paul, Wolf, Butler

13 pages

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Evolutionary primacy of sodium bioenergetics

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Evolutionary primacy of sodium bioenergetics

Mulkidjanian, Galperin, Makarova, Koonin, Wolf

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Evolutionary primacy of sodium bioenergetics

Mulkidjanian, Galperin, Makarova, Koonin, Wolf

19 pages

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Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

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Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Makarova, Aravind L, Koonin, Wolf

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Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Makarova, Aravind L, Koonin, Wolf

27 pages

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Galápagos and Californian sea lions are separate species: Genetic analysis of the genus Zalophusand its implications for conservation management

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Galápagos and Californian sea lions are separate species: Genetic analysis of the genus Zalophusand its implications for conservation management

Tautz Diethard, Trillmich, Trillmich Fritz, Wolf

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Galápagos and Californian sea lions are separate species: Genetic analysis of the genus Zalophusand its implications for conservation management

Tautz Diethard, Trillmich, Trillmich Fritz, Wolf

13 pages

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The origins of phagocytosis and eukaryogenesis

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The origins of phagocytosis and eukaryogenesis

Yutin Natalya, Koonin, Wolf

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The origins of phagocytosis and eukaryogenesis

Yutin Natalya, Koonin, Wolf

26 pages

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Testing the potential of a virtual reality neurorehabilitation system during performance of observation, imagery and imitation of motor actions recorded by wireless functional near-infrared spectroscopy (fNIRS)

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Testing the potential of a virtual reality neurorehabilitation system during performance of observation, imagery and imitation of motor actions recorded by wireless functional near-infrared spectroscopy (fNIRS)

Holper Lisa, Muehlemann Thomas, Scholkmann Felix, Eng Kynan, Kiper Daniel, Wolf, Martin Wolf

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Testing the potential of a virtual reality neurorehabilitation system during performance of observation, imagery and imitation of motor actions recorded by wireless functional near-infrared spectroscopy (fNIRS)

Holper Lisa, Muehlemann Thomas, Scholkmann Felix, Eng Kynan, Kiper Daniel, Wolf, Martin Wolf

13 pages

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Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermusWK1

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Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermusWK1

Saw, Mountain, Feng Lu, Omelchenko, Hou Shaobin, Stott, Zhao Guang, Wu Junli, Galperin, Koonin, Makarova, Rigden, Dunfield, Wang Lei, Alam Maqsudul, Wolf, Li Dan, Saito

Documents

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Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermusWK1

Saw, Mountain, Feng Lu, Omelchenko, Hou Shaobin, Stott, Zhao Guang, Wu Junli, Galperin, Koonin, Makarova, Rigden, Dunfield, Wang Lei, Alam Maqsudul, Wolf, Li Dan, Saito

16 pages

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Selection in the evolution of gene duplications

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Selection in the evolution of gene duplications

Kondrashov, Rogozin, Koonin, Wolf

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Selection in the evolution of gene duplications

Kondrashov, Rogozin, Koonin, Wolf

9 pages

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Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins

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Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins

Kondrashov, Rogozin, Tatusov, Koonin, Wolf, Jordan

Documents

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Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins

Kondrashov, Rogozin, Tatusov, Koonin, Wolf, Jordan

9 pages

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Phase 2 study of canfosfamide in combination with pegylated liposomal doxorubicin in platinum and paclitaxel refractory or resistant epithelial ovarian cancer

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Phase 2 study of canfosfamide in combination with pegylated liposomal doxorubicin in platinum and paclitaxel refractory or resistant epithelial ovarian cancer

Kavanagh, Ramirez, Meng Lisa, Levenback, Jones, Brown, Moore, Wolf, Bast

Documents

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Phase 2 study of canfosfamide in combination with pegylated liposomal doxorubicin in platinum and paclitaxel refractory or resistant epithelial ovarian cancer

Kavanagh, Ramirez, Meng Lisa, Levenback, Jones, Brown, Moore, Wolf, Bast

11 pages

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Documents

Interkingdom gene fusions

Kondrashov, Koonin, Wolf

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Interkingdom gene fusions

Kondrashov, Koonin, Wolf

13 pages

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

Shankavaram, Galperin, Aravind L, Koonin, Wolf, Natale

Documents

Savoirs

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

Shankavaram, Galperin, Aravind L, Koonin, Wolf, Natale

19 pages

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Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

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Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

Keller Alexander, Förster Frank, Müller Tobias, Dandekar Thomas, Schultz Jörg, Wolf Matthias, Wolf

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Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

Keller Alexander, Förster Frank, Müller Tobias, Dandekar Thomas, Schultz Jörg, Wolf Matthias, Wolf

12 pages

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Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

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Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Omelchenko, Galperin, Koonin, Wolf

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Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Omelchenko, Galperin, Koonin, Wolf

20 pages

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Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

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Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Makarova, Sorokin, Novichkov, Koonin, Wolf

Documents

Savoirs

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Makarova, Sorokin, Novichkov, Koonin, Wolf

20 pages

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Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

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Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

Didier Raoult, Yutin Natalya, Koonin, Wolf

Documents

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Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

Didier Raoult, Yutin Natalya, Koonin, Wolf

13 pages

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Evolution of gene fusions: horizontal transfer versus independent events

Documents

Evolution of gene fusions: horizontal transfer versus independent events

Yanai Itai, Koonin, Wolf

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Evolution of gene fusions: horizontal transfer versus independent events

Yanai Itai, Koonin, Wolf

13 pages

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Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

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Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

Lackner, Wu Shuangding, Bähler, Bähler Jürg, Wolf, Schmidt

Documents

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Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

Lackner, Wu Shuangding, Bähler, Bähler Jürg, Wolf, Schmidt

14 pages

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Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution

Documents

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution

Koonin, Wolf

Documents

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Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution

Koonin, Wolf

15 pages

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A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

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A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

Koonin, Fedorova, Krylov, Makarova, Mazumder Raja, Mekhedov, Nikolskaya, Rao B, Rogozin, Smirnov Sergei, Sorokin, Sverdlov, Vasudevan Sona, Wolf, Jackson, Jacobs, Natale, Yin

Documents

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A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

Koonin, Fedorova, Krylov, Makarova, Mazumder Raja, Mekhedov, Nikolskaya, Rao B, Rogozin, Smirnov Sergei, Sorokin, Sverdlov, Vasudevan Sona, Wolf, Jackson, Jacobs, Natale, Yin

28 pages

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Single-trial classification of motor imagery differing in task complexity: a functional near-infrared spectroscopy study

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Single-trial classification of motor imagery differing in task complexity: a functional near-infrared spectroscopy study

Holper Lisa, Wolf, Martin Wolf

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Single-trial classification of motor imagery differing in task complexity: a functional near-infrared spectroscopy study

Holper Lisa, Wolf, Martin Wolf

13 pages

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Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI s Framingham Heart Study

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Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study

Polak, Demissie Serkalem, O'Donnell, Cupples, D'Agostino, Hoffmann Udo, Hwang Shih-Jen, Ingellson Erik, Liu Chunyu, Murabito, Wolf, Fox

Documents

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Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study

Polak, Demissie Serkalem, O'Donnell, Cupples, D'Agostino, Hoffmann Udo, Hwang Shih-Jen, Ingellson Erik, Liu Chunyu, Murabito, Wolf, Fox

12 pages

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Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes

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Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes

D'Agostino, Govindaraju, Heard-Costa, Hwang Shih-Jen, Murabito, Newton-Cheh Christopher, O'Donnell, Seshadri Sudha, Vasan, Levy Daniel, Larson, Atwood, Cupples, Guo Chao-Yu, Benjamin, Wolf, Fox, Wang

Documents

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Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes

D'Agostino, Govindaraju, Heard-Costa, Hwang Shih-Jen, Murabito, Newton-Cheh Christopher, O'Donnell, Seshadri Sudha, Vasan, Levy Daniel, Larson, Atwood, Cupples, Guo Chao-Yu, Benjamin, Wolf, Fox, Wang

9 pages

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Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study

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Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study

Massaro, Kelly-Hayes Margaret, D'Agostino, Seshadri Sudha, Au Rhoda, Beiser, Kase, Decarli Charles, Atwood, Wolf, Destefano

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Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study

Massaro, Kelly-Hayes Margaret, D'Agostino, Seshadri Sudha, Au Rhoda, Beiser, Kase, Decarli Charles, Atwood, Wolf, Destefano

14 pages

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Genome-wide association with select biomarker traits in the Framingham Heart Study

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Genome-wide association with select biomarker traits in the Framingham Heart Study

Larson, Dupuis Josée, Lunetta, Govindaraju, Kathiresan Sekar, Keaney, Keyes, Lin Jing-Ping, Meigs, Robins, Rong Jian, Schnabel Renate, Vasan, Wilson, Benjamin, Wolf, Booth, Vita, Wang

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Genome-wide association with select biomarker traits in the Framingham Heart Study

Larson, Dupuis Josée, Lunetta, Govindaraju, Kathiresan Sekar, Keaney, Keyes, Lin Jing-Ping, Meigs, Robins, Rong Jian, Schnabel Renate, Vasan, Wilson, Benjamin, Wolf, Booth, Vita, Wang

12 pages

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